In the natural sciences higher order structures often occur. There seems to be a need for good methods of describing what we mean by higher order structures in various contexts. This is what hyperstructures are intended to do. We motivate and introduce this new concept. Next we illustrate how it can be applied in various types of genomic analysis—particular the correlations between single nucleotide polymorphisms and diseases. The suggested structure is quite general and may be applied to a variety of situations. Finally we discuss how data sets (f. ex. genomic) may lead to topological spaces, giving new invariants and lead to the prediction of hyperstructures.